Unsupervised spike sorting with ICA and its evaluation using GENESIS simulations
نویسندگان
چکیده
Data acquisition for multisite neuron recordings still requires two main problems to be solved — the reliable detection of spikes and the sorting of these spikes back to their originating neurons. Approaches and solutions for both problems are difficult to evaluate quantitatively, due to a lack of knowledge about the “truth behind the experimental data. Biologically realistic simulations allow to overcome this fundamental problem and to control all the processes which lead to the measured data. Within this framework the quantitative evaluation of the performance of data analysis methods becomes possible. In this paper the potential of Independent Component Analysis (ICA) for spike sorting and detection is studied. A biologically realistic simulation of hippocampal CA3 is used to get a measure of quality and usability of ICA to solve the neural cocktail party problem. The results are promising.
منابع مشابه
Title : 1 Applicability of Independent Component Analysis on High - Density
31 Emerging CMOS-based, high-density microelectrode array (HD-MEA) devices provide high spatial resolution at subcellular 32 level and a large number of readout channels. These devices allow for simultaneous recording of extracellular activity of a 33 large number of neurons with every neuron being detected by multiple electrodes. In order to analyze the recorded signals, 34 spiking events have...
متن کاملA new approach to spike sorting for multi-neuronal activities recorded with a tetrode--how ICA can be practical.
Multi-neuronal recording with a tetrode is a powerful technique to reveal neuronal interactions in local circuits. However, it is difficult to detect precise spike timings among closely neighboring neurons because the spike waveforms of individual neurons overlap on the electrode when more than two neurons fire simultaneously. In addition, the spike waveforms of single neurons, especially in th...
متن کاملImproved Algorithm for Fully-automated Neural Spike Sorting based on Projection Pursuit and Gaussian Mixture Model
For the analysis of multiunit extracellular neural signals as multiple spike trains, neural spike sorting is essential. Existing algorithms for the spike sorting have been unsatisfactory when the signal-to-noise ratio (SNR) is low, especially for implementation of fully-automated systems. We present a novel method that shows satisfactory performance even under low SNR, and compare its performan...
متن کاملSpike Detection and Sorting: Combining Algebraic Differentiations with ICA
A new method for action potentials detection is proposed. The method is based on a numerical differentiation, as recently introduced from operational calculus. We show that it has good performance as compared to existing methods. We also combine the proposed method with ICA in order to obtain spike sorting.
متن کاملHierarchical Adaptive Means (HAM) clustering for hardware-efficient, unsupervised and real-time spike sorting.
This work presents a novel unsupervised algorithm for real-time adaptive clustering of neural spike data (spike sorting). The proposed Hierarchical Adaptive Means (HAM) clustering method combines centroid-based clustering with hierarchical cluster connectivity to classify incoming spikes using groups of clusters. It is described how the proposed method can adaptively track the incoming spike da...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
- Neurocomputing
دوره 65-66 شماره
صفحات -
تاریخ انتشار 2005